contents

Introduction to Human Brain

A True Story

Key Themes Explored

Why Study the Brain?

How to Study the Brain

Course Structure and Topics

Reading Scientific Papers

Notes on Motion Perception and Neuroanatomy

Introduction

Key Observations in Motion Perception

Computational Challenges in Perception

Neuroanatomy Basics

Overview of the Human Brain

Structure of the Brain

Key Brain Structures

Cortex Overview

Retinotopy and Sensory Maps

Receptive Fields

Visual and Auditory Maps

Criteria for Cortical Areas

Case Studies and Research Methods

Conclusion

Computational Theory of Mind and Brain

Introduction

Today’s discussion revolves around David Marr’s computational theory level of analysis, focusing on how the brain gives rise to the mind. Specifically, we will explore this framework through the lens of color vision and face perception.

Marr’s Framework

Marr proposed a three-level framework to analyze cognitive processes:

  1. Computational Theory: What is computed and why? This is the abstract level where we define the problem to be solved.

  2. Algorithm and Representation: How is it computed? This level outlines the specific strategies and representations employed to solve the problem.

  3. Hardware Implementation: What physical system is executing the solution? This level concerns the biological or computational hardware involved.

Understanding Color Vision

Color vision provides an excellent example to illustrate Marr’s ideas. The inputs for color perception can be represented as follows:


L = R ⋅ I

Where:

The challenge is to solve for R given L—a fundamentally ill-posed problem since various combinations of R and I can produce the same L. The goal is to deduce properties about the color of an object based on incomplete information.

Ill-Posed Problems

An ill-posed problem occurs when: - There are infinitely many solutions for a given input. - Additional assumptions or contextual knowledge is required to constrain the possible solutions.

Face Perception

The second focus area is face perception, which also deals with ill-posed problems. Face recognition hinges on distinguishing individuals despite variability in appearance, expressions, and lighting.

Key questions in face perception include:

Experimental Evidence

Research demonstrated that human facial recognition employs learned experiences rather than strict template matching:

  1. Participants displayed difficulty matching unfamiliar faces but excelled with familiar faces.

  2. The inferential processes at play leverage contextual cues and long-term exposure to familiar faces.

Functional Neuroimaging

Functional MRI (fMRI) is utilized to pinpoint brain regions associated with face processing. The key concepts include:

The BOLD signal can be mathematically represented as:


BOLD = f(Neural Activity)

Where f is a function describing the relationship between neural firing and hemodynamic response.

Future Directions

Future investigations should consider: - Developing more sophisticated models to analyze the data produced by fMRI. - Employing machine learning approaches to enhance understanding of face recognition processes. - Exploring differences between face and object recognition in greater depth.

Conclusion

To truly understand cognitive processes, including color vision and face perception, one must consider multiple levels of analysis. Marr’s framework offers a structured approach to dissect these complex phenomena, guiding future research avenues.

Methods in Human Cognitive Neuroscience: Face Perception

Agenda

Understanding the Questions

Invariant Representation

Definition: Ability to extract an abstract representation of faces that allows recognition despite variability in appearance.

Behavioral Findings

Face Inversion Effect

Strengths and Weaknesses of Behavioral Methods

Strengths
Weaknesses

Functional MRI (fMRI)

Purpose

Experimental Design

  1. Test hypothesis: Is there a region of the brain selectively responsive to faces?

  2. Present faces and objects in a fMRI scanner

  3. Identify regions that respond more strongly to faces than objects

Conditions Overview

Definition: In this context, a "condition" refers to manipulated stimulus characteristics to measure responses. Examples include different types of stimuli such as faces, hands, etc.

Results and Implications

Alternative Methods in Cognitive Neuroscience

Electrophysiological Measurements: EEG/ERP

Magnetoencephalography (MEG)

Intracranial Recordings

Causal Inferences from Patient Studies

Prosopagnosia

Opposite Case: CK

Conclusion

Notes on Cognitive Neuroscience: Face Perception and Experimental Methods

Introduction

These notes summarize the methods in human cognitive neuroscience, particularly focusing on face perception, the challenges of inferring causal relationships in neural data, and various techniques including Transcranial Magnetic Stimulation (TMS) and animal studies.

Causality in Neuroscience

Causality refers to the relationship where one event (X) causes another (Y). Specifically, if x causes y, then y would not occur without x or occurs more frequently when x occurs compared to when x does not occur. This requires experimental manipulation of x.

Causal Chain

Within this causal chain, we differentiate between:

Temporal Resolution in Functional MRI

Functional MRI primarily measures blood flow (BOLD response), leading to delays in the recording of neural activity. For instance:
BOLD response delay ≈ 5 − 6 seconds relative to neural activity.
Contrastingly, direct neural activity occurs within milliseconds; thus, fMRI lacks temporal precision.

Transcranial Magnetic Stimulation (TMS)

TMS is a non-invasive method to disrupt neural activity and establish causal relationships. This involves:

Spatial resolution is around 1-2 cm, and it tends to disrupt function rather than reveal direct perception changes.

Studying Face Perception

Two significant regions related to face perception are:

Experimental Design Using TMS

David Pitcher’s experiment demonstrated the causal role of the occipital face area through a simple face-matching task, showing that TMS applied during specific time windows disrupted accuracy in recognizing faces:

Animal Studies in Neuroscience

Animal studies allow for direct assessment of neuronal activity and anatomical connections not feasible in human subjects:

Ethical Considerations

Research involving animals is heavily regulated to minimize pain and suffering. Ethical debate around the necessity and benefits of such research is ongoing in the scientific community.

Key Terminology in Experimental Design

Conclusion

The complex relationship between neural activity, perception, and behavior necessitates a diverse set of methodologies to dissect these interactions fully. Despite the challenges, techniques like TMS and studies in animals provide invaluable insights into the neural mechanisms of cognitive processes, such as face perception.

Notes on Experimental Design, Category-Selective Regions in the Cortex, and Neural Decoding

Experimental Design

Key Concepts

Task Design

Baseline Conditions

Within-Subjects Design

Category-Selective Regions in the Cortex

Overview

Research Findings

Ongoing Controversy

Haxby’s Challenge

Decoding Signals from Brains

Neural Decoding: Overview

Methods of Neural Decoding

Findings from Studies

Implications

Conclusion

Cognitive Neuroscience: Navigation and Brain Function

Key Concepts

Functional Specificity Challenge

The key points from Haxby’s article highlight the challenge to the notion of functional specificity in regions of the brain:

Empirical Data Addressing Haxby’s Challenge

Data types that can offer insights into the question of specificity vs. generality include:

Methodology for Decoding Information

Discussed methods for exploring representation in the brain, such as:

Fundamental Questions of Navigation

Two fundamental questions every organism needs to address:

  1. Where am I?

  2. How do I get from here to there?

Components of Navigation

Understanding of navigation involves multiple components, such as:

Cognitive Maps and Neural Basis

Cognitive Maps

Introduction to the concept of cognitive maps began with Tolman’s experiments with rats, leading to the idea that:

Key Brain Regions

Key brain regions involved in navigation:

Neural Evidence and Functionality

To investigate the specific functions, various methodologies such as:

Multi-Voxel Pattern Analysis (MVPA)

Introduction to MVPA as a method to determine the representation of information in neural populations:

An alternative method when MVPA is inadequate:

Conclusions

Overall, understanding navigation in cognitive neuroscience requires examination of functional specificity, the role of key brain regions, empirical methods to discriminate functions, and methodologies like MVPA and event-related fMRI adaptation.

Notes on Navigation and Cognition

Introduction to Navigation

In today’s discussion, we will cover:

Basic Problems of Navigation

Two fundamental questions arise in navigation:

Components of Knowing Where You Are

  1. Recognizing familiar locations (landmarks).

  2. Understanding general environment types (urban vs natural).

  3. Estimating immediate spatial location with respect to boundaries.

  1. Beaconing: Directly moving toward a visible or audible destination.

  2. Cognitive maps: Mapping the environment spatially when direct navigation isn’t possible.

Neural Basis of Navigation

Key Brain Regions

Several brain regions participate in navigation:

Cognitive Map Theory

The hippocampus is largely considered the location of the cognitive map:
Cognitive Map = Spatial representation of environment
Classic studies in rats demonstrate the capability to navigate via a learned map of environments instead of using sequential directions.

Place Cells

Grid Cells

Grid cells exist in the entorhinal cortex and respond across multiple locations following a hexagonal pattern:
Grid Cell Activity ∼ Hexagonal spatial organization

Head Direction Cells

Reorientation

Reorientation occurs when an individual loses their spatial bearings. Key insights include:

  1. The reliance on geometrical cues from environmental layout.

  2. The phenomenon where stable environmental features are prioritized over salient landmarks (as demonstrated in rat studies).

Experimental Findings

  1. Rats trained in rectangular mazes showed reliance on the room’s geometry rather than surface features.

  2. Infants exhibited similar behaviors, highlighting a possible evolutionary adaptation to rely on stable shapes for navigation.

Information Processing and Encapsulation

The navigation system exhibits a phenomenon known as informational encapsulation:

Advanced Cognitive Applications

Recent studies have explored how navigational systems inform other cognitive functions:

Conclusion

The study of navigation extends beyond merely knowing where one is; it encompasses understanding how various cognitive systems intertwine in decision-making, memory, and even social interaction. Continuous research into the neural mechanisms underlying these processes is critical for a comprehensive understanding of cognition.

Cognitive Development: Origins of Knowledge and Face Perception

Introduction

Brain Development

General Overview

Face Perception

Empirical Evidence of Face Detection in Newborns

Theoretical Considerations in Face Perception

Nature vs. Nurture Debate

Neural Mechanisms and Functional Organization

Future Directions and Ongoing Research

Conclusion

Notes on Face Perception and Cognitive Neuroscience

Overview

The lecture discusses face perception, the role of innate structures in the brain, and the development of neural regions specializing in face processing. It also explores the connectivity patterns in the brain and how they relate to cognitive functions, specifically in the context of both normal and atypical development.

Key Questions

Recap of Key Points

Last time, the following key points were discussed:

Possible Theories

Innate Properties

A possibility exists that innate properties may lead to general selectivity for visual objects like curved shapes, which can subsequently allow for the emergence of face selective mechanisms once exposed to faces.

Connectivity Patterns

Another promising avenue of research is studying the long-range structural connectivity in the brain. This connectivity might be responsible for the location and function of regions that become specialized for face processing.

Deep Net Modeling

Recent advancements in deep neural networks allow investigators to create models that might emulate the emergence of specialized areas in the brain. Questions include:

Structural Connectivity and Diffusion Imaging

Diffusion MRI

The primary method for studying structural connectivity in humans is through diffusion MRI, which measures the direction of water diffusion in the brain. Areas where axons are present will show a preferential direction of diffusion due to their myelinated fibers.
Diffusion direction ∝ Orientation of Axons
This enables researchers to visualize the long-range connections in the brain.

Tractography

Using tractography, researchers can model the potential pathways of connectivity based on diffusion data. They explore whether the connectivity patterns can predict the function of the regions.

Connectivity Fingerprints

Researchers create connectivity “fingerprints” for regions like the fusiform face area and seek to determine if these fingerprints predict functional selectivity. It has been shown that the fusiform face area has a distinct fingerprint that correlates with face processing functions.

The Case of Rewired Ferrets

Research conducted on ferrets that had their visual connections redirected showed compelling evidence that the functionality of brain regions can be influenced by what kind of input they receive. These studies suggest:

Visual Word Form Area

The visual word form area is a specific case where experience determines selectivity:

Phenomena of Innateness

Different proposals arise concerning which brain regions or functions are innate versus those shaped by experience. For instance:

Reorganization After Brain Damage

A contrasting case is presented regarding brain damage:

Conclusion

The discussion on face perception, neural wiring, and the role of experience opens up many avenues for further research. The balance of innateness and experience in shaping the developing brain and its functions remains a fundamental question in cognitive neuroscience.

Lecture Notes on Number Sense

Introduction

Understanding Numerical Concepts

Behavioral Aspects

Biological Basis

Key Concepts of Number Sense

Approximate Number System (ANS)

Symbolic vs. Nonsymbolic Numbers

Nonsymbolic Representation

Symbolic Representation

Development and Individual Differences

Neural Mechanisms

Neuroanatomy

Neuroscience Studies

Conclusion

Notes on Hearing and Speech Perception

Introduction to Hearing

Hearing involves the ability to extract rich information from sound, enabling us to:

What is Sound?

Sound is characterized by longitudinal compressions and decompressions traveling through air to the ear. The key aspects are:

For an auditory system to operate effectively, it encounters computational challenges, including:

Spectrograms

Spectrograms visually represent sound frequency, intensity, and time:

For example, spectrograms of whistling versus talking show distinct energy patterns due to pitch differences and articulatory features.

Speech Perception

Speech is composed of several phonemes, which are the distinct units of sound. Important notes include:

Challenges in Speech Perception

The main challenges stem from:

Neural Processing of Sound

The processing of auditory information progresses from the cochlea (where transduction occurs) to various pathways leading to the cortex. Key points include:

Research Insights

Recent studies reveal:

Conclusion

The auditory system is proficient at processing complex sounds, enabling tasks such as localizing sound sources, recognizing speech, and interpreting environmental cues. The fundamental challenges to auditory perception arise from invariant processing, multiple overlapping sounds, and various influences of conversational context.

Lecture Notes on Music and Audition

Introduction to Audition

Computational Challenges in Audition

Ill-Posed Problems

Speech Perception

Phonemes

Talker Variability

Neural Basis of Auditory Processing

Music as a Unique Human Experience

Evolutionary Theories

Cross-Cultural Universality

Music Processing in the Brain

Amusia

Functional Brain Imaging Studies

Conclusion

Lecture Notes on Language and Representational Similarity Analysis

Overview

This lecture discusses concepts in language processing and representational similarity analysis (RSA), particularly in the context of functional MRI (fMRI) and cognitive neuroscience.

Representational Similarity Analysis (RSA)

Definition

RSA is a method for analyzing the similarities in neural responses across different stimuli or conditions. It extends upon multiple voxel pattern analysis (MVPA), which focuses on binary classifications.

Basics of MVPA

In MVPA, responses from brain regions (voxels) are compared while subjects view different stimuli (e.g., dogs vs. cats). The method applies a split-half analysis, where data from one condition is compared against another:
$$\text{Similarity}(A,B) = \frac{\sum_{i=1}^{n} r_{A_i} \cdot r_{B_i}}{|A|\cdot|B|}$$
Here, rAi and rBi represent response vectors from conditions A and B, respectively, and n is the number of voxels.

Advantages of RSA

RSA analyzes patterns across multiple conditions, providing a more nuanced view of brain representation:

Application of RSA

  1. Behavioral Similarity Judgment: Participants can rate the similarity of stimuli (e.g., dogs to cats).

  2. Correlation of Matrices: These similarity matrices can be correlated to assess the relationship between neural responses and behavioral judgments:


Correlation(Mneural, Mbehavioral)
This can provide insights into how similar or different representations are in the brain versus behavioral assessments.

Cognitive Components of Language

Essence of Language

Language allows humans to express complex ideas. The essential properties include:

Components of Language

  1. Phonology: The sounds of language (e.g., distinguishing between /b/ and /p/).

  2. Semantics: Understanding a word’s meaning, both singularly and within context.

  3. Syntax: Rules that govern how words combine (e.g., word order).

  4. Pragmatics: The context of language use and inferred intention (e.g., the difference between "Can you pass the salt?" and "Please pass the salt.").

Language and Thought

Relationship Between Language and Thought

Consider the following questions:

  1. Is language a separate cognitive function or is it intertwined with overall thought processes?

  2. Do individuals with specific cognitive impairments retain language capabilities?

Aphasia Studies

Studies on patients with global aphasia show that while they may lose language ability, they can retain certain cognitive functions:

Neuroimaging Evidence

Functional MRI studies measure brain activity during cognitive tasks:
Initial studies suggested overlap between language and other cognitive functions; however, more refined methods of individual analysis indicated that:

Conclusion

The integration of RSA with traditional language and cognitive studies enhances our understanding of how representations are formed in the brain and the distinct roles that language plays within the broader context of human cognition.

Notes on Social Cognition and Theory of Mind

Introduction

The Importance of Social Cognition

Social Cognition Defined

The Cognitive Mechanisms in Social Cognition

Components of Mentalizing

Example of Mentalizing

Theory of Mind and False Belief Tasks

Autism and Theory of Mind

Neuroimaging Insights

Moral Reasoning as a Test Case

Results in Autism

Conclusion

Lecture Notes: The Psychology of Social Cognition

Introduction

Understanding what individuals think and believe transcends external appearances and is crucial for predicting behavior and interactions. This is fundamentally considered part of being human and enriches literature and social understanding.

False Belief Tasks

Sally-Anne Task

The classic method to study false beliefs involves the Sally-Anne task, which illustrates how individuals can hold false beliefs that differ from reality.

Developmental Aspects

The Social Brain: TPJ (Temporo-parietal Junction)

Evidence suggests the TPJ is critical in processing others’ thoughts and beliefs distinctively from physical representations.

Brain Activation

Moral Reasoning and TPJ

The TPJ also plays a role in moral reasoning. Individuals with autism show less sensitivity to the knowledge context of others’ actions, particularly in moral evaluations.

White Matter and Connectivity in the Brain

Importance of White Matter

Connectivity and Function

Developmental Aspects

Clinical Implications

Disruptions in white matter are linked to various disorders (e.g., dyslexia, autism), emphasizing the importance of studying connectivity patterns in clinical research.

Diffusion Imaging

Diffusion imaging leverages the principle that water diffuses preferentially along fiber bundles to visualize brain connectivity.

Fractional Anisotropy (FA)

FA measures the degree of orientation in a brain region’s fibers, which has clinical implications for understanding various conditions.

Challenges of Tractography

While tractography can identify major fiber bundles, it can face significant challenges, including:

  1. Crossing Fibers Problem: Difficulty in distinguishing pathways where fibers cross each other.

  2. Heuristic Constraints: Assumptions about fiber behavior can lead to inaccuracies.

Resting-State Functional Connectivity

Resting-state studies allow researchers to examine where regions in the brain show correlated activity without any explicit task.

Default Mode Network (DMN)

The DMN includes regions that are more active during rest and less active during demanding tasks. It reflects introspection, memory recall, and social thinking.

Multiple-Demand Network

Regions that activate during a variety of challenging cognitive tasks demonstrate fluid intelligence and support task performance across domains.

Conclusion

The study of the brain requires an understanding of both individual regions and broader networks, emphasizing the complexities in how we comprehend social cognition, connectivity, and moral reasoning.

Notes on Attention and Cognition

Introduction to Attention

Limited Processing Ability

Cognition as a Limited Resource

Perception Demonstration

Capacity Limits of Attention

Types of Attention

Overt vs. Covert Attention

Controlled vs. Stimulus-Driven Attention

Spatial vs. Feature-Based Attention

Neuroscience of Attention

Brain Regions Involved in Attention

Neural Correlates of Awareness

Conclusions